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Documentation Index

Fetch the complete documentation index at: https://docs.boltz.bio/llms.txt

Use this file to discover all available pages before exploring further.

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Overview

Experiments organize your virtual screens around specific hypotheses. Each experiment can contain multiple virtual screens and helps you track progress toward your research goals.

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Creating a New Experiment

  1. From your project dashboard, click ”+ New Experiment” in the Experiments section.
Create new experiment form
  1. Enter a Name (required) - e.g., “First campaign to find initial hits”
Create new experiment form
  1. Enter a Hypothesis (optional) - Describe the specific goal or hypothesis you’re testing
    Good hypotheses are specific and actionable. For example: “Identified Pocket A on target X as having potential for blocking target X activity through high-affinity protein binder engagement.”
  2. Click “Create Experiment”.

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Experiment Dashboard

Once created, you can access your experiment to:
  • View all virtual screens within the experiment
  • See candidate results and metrics
  • Triage and organize candidates
  • Add new virtual screens or quick-add candidates

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Adding Candidates to Experiments

From an experiment, you have two options:
Create new experiment form

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Virtual Screen

Create new experiment form
Generate or upload thousands of candidates to evaluate against your target(s). Best for large-scale screening campaigns.

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Quick Add Candidates

Add up to 20 candidates manually to dock and evaluate against your target(s). Useful for testing specific sequences or small batches.